PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.R0TBT
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 95aa    MW: 10693.9 Da    PI: 8.9427
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.R0TBTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.66e-08855246
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     g+W++ + + + +a + + ++   +W+ +a+ +g g+t+ ++k ++  
      Aradu.R0TBT  8 GSWSAKDNKAFERALAVYDKDtpdRWNNVANAVGGGKTPDDVKTHYEL 55
                     89*******************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.583561IPR017884SANT domain
SMARTSM007178.7E-8659IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-4759IPR009057Homeodomain-like
PfamPF002492.8E-6854IPR001005SANT/Myb domain
SuperFamilySSF466893.51E-12865IPR009057Homeodomain-like
CDDcd001671.90E-5957No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MASMSASGSW SAKDNKAFER ALAVYDKDTP DRWNNVANAV GGGKTPDDVK THYELLLRDI  60
KFIESGQVPF PYNKNLNPTS QQEHDNNRLK NLKLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-34194192RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946388.14e-66PREDICTED: transcription factor RADIALIS-like
SwissprotQ58FS39e-35RAD_ANTMA; Transcription factor RADIALIS
TrEMBLG7IVT61e-43G7IVT6_MEDTR; Transcription factor radialis-like protein
STRINGGLYMA02G18210.11e-39(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.29e-27RAD-like 6